What do you think the chances are of a stone getting into the engine bay and finding its way through one of the tiny holes in the airbox? Also it's got a filter inside the box which should stop anything like that happening. Personally I would just buy an induction kit as the standard airfeed is not good.
You also don't want to be sucking warm air into the engine from the engine bay.
I am the one who did this to my evo. It's a free mod which improves sound and has little to no effect on performance.